NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211651_10338637

Scaffold Ga0211651_10338637


Overview

Basic Information
Taxon OID3300020408 Open in IMG/M
Scaffold IDGa0211651_10338637 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)564
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0596Long. (o)-84.553Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072239Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0211651_103386373F072239N/ATKKQVIVKKDRLTLGGFSPVFQENLDYKQSLFIYAGQETEKVVKKVDSKRKEVYTYKPHIMICIKTGEKFKIAGYYIQTYFIKPKK
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