NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211699_10022729

Scaffold Ga0211699_10022729


Overview

Basic Information
Taxon OID3300020410 Open in IMG/M
Scaffold IDGa0211699_10022729 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2424
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_076
CoordinatesLat. (o)-21.0675Long. (o)-35.3923Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028003Metagenome / Metatranscriptome193Y
F075321Metagenome / Metatranscriptome119Y
F081356Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0211699_100227294F028003GAGMCDKGQSKLASDYLSFLKFKEVQNALVKISQTHGKTYMFDGIVHEKGMTCAQADRVLDNIFNAKTNLEMIGFIVKVARQIGFSEITLPRKIRWTK
Ga0211699_100227295F081356GAGGMDKVIEGKYKLIKDYTSIEGALYTNEVVRVYDNNTKPGHKRAKDSMGRVWFIPEKYLKKMXCFLNLTYIYIXKKN
Ga0211699_100227296F075321AGGAGMTKVVYNTHFPAIDRDEFLTPFDRMFDQIVGTSFPEL
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