NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211516_10285022

Scaffold Ga0211516_10285022


Overview

Basic Information
Taxon OID3300020413 Open in IMG/M
Scaffold IDGa0211516_10285022 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)744
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_018
CoordinatesLat. (o)35.7593Long. (o)14.3453Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030492Metagenome185Y
F053544Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0211516_102850221F053544N/AMKSIGFFGDSFCASNQSESWCNILQQKLGTDRIRWFGKPGKSIWSVFFQYNKLIEQNAVPDISIFCWTEPYRLYHPKHILSANTQPLQGVDPNVYKALDQYWIHLHNYDKD
Ga0211516_102850222F030492N/AMMYSHSDWNHKQGTIPVHWNSNHYEDLPWYENPDKRQGFSTPEENYDIYKERVGCLIPKFEEVGKGVFIPADVDAVFGYVLKYFHLNDPVYAFAKYTPGLILPWHKDNYPTYARNKNAKVEEIVRIMI
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