NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211523_10000638

Scaffold Ga0211523_10000638


Overview

Basic Information
Taxon OID3300020414 Open in IMG/M
Scaffold IDGa0211523_10000638 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20087
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_036
CoordinatesLat. (o)20.8199Long. (o)63.5138Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078260Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211523_100006386F078260N/AVKNTFLPILLFSFFSFISESVFANAKPLPDYNIETIKWGTQKYKFTLIKDEEKIELGSAILCTELKDDRVILSDEYFVRYEGKPMSLNMKLVCLQDQYLSPVKIECEGKGDEMPTLKAIIKDGEAKISGEWNKTMKIPKGTVTSAAFYRIVTQLPRVQGATYRYDFALEAMEMHLKRDYIAKVIGKETIIIDGAKIECWKISQNGGAIMEQLFWVSEDGILVRVLMDGRKQMDLQMGD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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