NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211523_10001670

Scaffold Ga0211523_10001670


Overview

Basic Information
Taxon OID3300020414 Open in IMG/M
Scaffold IDGa0211523_10001670 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11731
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_036
CoordinatesLat. (o)20.8199Long. (o)63.5138Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069995Metagenome / Metatranscriptome123Y
F091882Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211523_1000167029F069995AGGAGMSTRYFSCSCHLQLDKVCPHDNDPFNARRMRTDWTVADFNGLSESEVEEINASNQRYNDLAESIEEMNMEIAMRQIDDGTYDTPVKKSKKRKSKRASTKELFEDCPEDVLADLAEDGFDLNQ
Ga0211523_1000167030F091882AGGAMKTIKPLFIPLKSVPYIKHTHTVSAHSGNLHKMNTYQVWQNAGLRHKVYAQADLDTVYDACDAYWETIESRLLTSLLLVDPTYVPRKETMSCAGDTYSRIRHDLRMALRGLYKAYATRNWQWVSTYSVKVNEHYLRHF
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