NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211553_10061635

Scaffold Ga0211553_10061635


Overview

Basic Information
Taxon OID3300020415 Open in IMG/M
Scaffold IDGa0211553_10061635 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1592
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_145
CoordinatesLat. (o)39.0869Long. (o)-70.0111Alt. (m)Depth (m)590
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020371Metagenome / Metatranscriptome224Y
F056157Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0211553_100616352F056157N/AMAKKKLASQDYWAQHIIRAQQGGKDYIFALVRRKYSDDDIEPVGPGEYLGLDQKKNYPKITDNDPDSETFGKRVDKPNAEATGIKIIYKDLFTPENIKKYQSMVGINDFGETAYLYKFKQITIQADKVNEFWSTTQDDAYNKYILKEQVIKIEESKSNTRRRVSKKAG
Ga0211553_100616353F020371N/AVLQDSIQVASNKVEQRQSFDVITLADASLTAKAAAGAWDTFVAATDRSTANPLLDLGVAQLLIEGSGVGGRMSRVGMHPIDFAKYMGNTFIRGVASTKPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIANFQGPQRIGSAHDEETGDDKYFIIDYHLAAVIQSETGRQLTGCSTPTNWT
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