Scaffold Ga0211644_10001624

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211644_10001624

Scaffold Ga0211644_10001624

Overview

Basic Information
Taxon OID	3300020416 Open in IMG/M
Scaffold ID	Ga0211644_10001624 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11049
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_110
Coordinates	Lat. (^o)	-1.972	Long. (^o)	-84.601	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F094546	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211644_100016249	F094546	GAGG	MNTDLLALTPELVLFVKKLVMHSRGGLTKDERQELAADLIQLLYKVLKELVDMDEEQR

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