NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211528_10088070

Scaffold Ga0211528_10088070


Overview

Basic Information
Taxon OID3300020417 Open in IMG/M
Scaffold IDGa0211528_10088070 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1275
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0108Long. (o)64.532Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019327Metagenome / Metatranscriptome230Y
F033761Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0211528_100880701F019327N/AVKLKHYTLKPYQLESKHLSQIHKIIEKVVSEKKDEYWDNYTDYSVFDQTMITIGLVDDDVKCFSSIYTREFYGDYVYRLFNRFLVDDDIREEGGSKSYKGEHRFFDMIHQQIEFVKTLEPKFYFMSRQRKNTRWLKWYFNKFNKQYDTNLVVSDEQYRVCNGSNYDCCQTLIYPKEMKIPFEKLL
Ga0211528_100880702F033761GGAGMAQINNHEFYGLDTAYVEKHKELFNFFDSQNLDVEINDDFAELKSILTSKDKDDYPYDFDPAFESYLDKATGFVLYLRYNNEVVATYAAKKLSLLNFIEQMKLKYPGNYETIDEFPGQEAYSSCQWVSKEHRGKKWGRVLDHLKKNICFDLMKCDTNFAIHKSDLRDYHVNHLAYSNNKKLAVIPNGDVGGAGEVIDKEYWIAYSSNTEWADKQSEVKTLYT
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