NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211557_10114514

Scaffold Ga0211557_10114514


Overview

Basic Information
Taxon OID3300020418 Open in IMG/M
Scaffold IDGa0211557_10114514 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1320
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_142
CoordinatesLat. (o)25.5416Long. (o)-88.4044Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005720Metagenome / Metatranscriptome392Y
F030157Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0211557_101145141F030157N/AYISDVSGEVTHSTASANTAALKLSIEAIQNQGVNVLGMGALGNSNTEQTYMVRADALDTISGTTTVAAIQAAIRGLDALTPDKVTADISSATAGDRDMSDTQVA
Ga0211557_101145143F005720AGGAGMPATSNNSANMSRRQSFNGKGLTFIEMIFDDEVATTASTPEAKDSAFEICSEIIQEKGTLLAKSYSLGNKCTEKDAAAAASMTEDELIDVYTFIVEGTPGQYNTADSVGDINLDPNQADSSDPGVIADAEADLEAEILARLSENDSAASVHVDVRYLPADGVTSAGEEIIYGVNSARVNG
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