NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211557_10356147

Scaffold Ga0211557_10356147


Overview

Basic Information
Taxon OID3300020418 Open in IMG/M
Scaffold IDGa0211557_10356147 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)655
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_142
CoordinatesLat. (o)25.5416Long. (o)-88.4044Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029936Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0211557_103561471F029936N/AGNPKSNDLERLELTSEDGSTINYSVDGSTTAVTLTTAPADGTQVKILHKKGQVWYTAKDGNPSNGLGLQASTTAQAKFIAGEPTNAPE
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