Scaffold Ga0211512_10056938

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211512_10056938

Scaffold Ga0211512_10056938

Overview

Basic Information
Taxon OID	3300020419 Open in IMG/M
Scaffold ID	Ga0211512_10056938 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1870
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_004
Coordinates	Lat. (^o)	35.5571	Long. (^o)	-6.5586	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078260	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211512_100569382	F078260	N/A	MKNTFLPILLFSFFLFISESIFAKAKPLPDYNMETIKWGTQKYKFTLIKDEEKVELGSAILRTELKDDRVILTDKYLLRHRGKTMSANMKQVCLKDQYLSPVKIECEGRGSEEIPTFNAIIKDGEAKISAPWNKSMKIPEGTVTTAAFFRIVTQLPRVRGAIYRYGFALETSEMNLKKAYIAKVIDKETIISNGAKVECWKISQNGGGIMEQLFWVTEDGTLQRALMDRRKQIDLQMGD

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