NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211580_10000325

Scaffold Ga0211580_10000325


Overview

Basic Information
Taxon OID3300020420 Open in IMG/M
Scaffold IDGa0211580_10000325 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30655
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (54.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.493Long. (o)-159.0606Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002190Metagenome / Metatranscriptome585Y
F011890Metagenome286Y
F012068Metagenome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0211580_1000032513F002190GGAGLSLCYYRCFVTKNNKTEEYGYGLPWRDVRKEVQKHYDEGADAVELEMITEEEFNDRLPKP
Ga0211580_1000032517F012068GAGGMTPLAKMFLPSKDRLLHNAKTMMDNAQDPWFKNYWTNVYAHLCKQYKKLH
Ga0211580_1000032519F011890AGGAGMKIKIKEISLAIISTITVIALTLVLLHYFETPSKAETQEPITLINSGKAGGSFNARTLMYKEGLIAYGYNVKFENIGKISQAVKLFKESKEPTIMVYANNQVYKQNLFHTEENFIMAEYQQPLYVCRTNASLGKKEKLTVAHGKGYDPKLLQTLLGDDIILVPYKNSGAMLKGILGGDVDMMVNNQGKSFKYMKSGNGQCEPSNQLPMMIATVIGKNIDLQLIRKVIFDISMDIQFIEYHTTRKLIRPSSTWAYELAVVQTLEKGYEIK
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