NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211653_10121259

Scaffold Ga0211653_10121259


Overview

Basic Information
Taxon OID3300020421 Open in IMG/M
Scaffold IDGa0211653_10121259 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1159
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002412Metagenome / Metatranscriptome561Y
F003169Metagenome / Metatranscriptome504Y
F004715Metagenome / Metatranscriptome427Y

Sequences

Protein IDFamilyRBSSequence
Ga0211653_101212591F004715AGGAMIPYTEDEMKWISKGKKKRRSNQTADGQPPQEEDDRLWQRCWGIRTTIEVDGKQYVVPIQ
Ga0211653_101212593F002412N/AMLRVFVIYIILTTTAIAFHENTFAVFELREELQMLYMNMWELLHQLEYVTADQRPVVYSDIQHIQSEIQRVIAELVWHDQQQHP
Ga0211653_101212594F003169N/AMIKYPLYKKNAQRKNTLLYPGLTTVPLDRIITYMQYYYVLACMGKQCFRYYCQLDPESADILHDVLVCKYDLVQVCEVPYSSVEPDLVIK
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