NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211702_10125155

Scaffold Ga0211702_10125155


Overview

Basic Information
Taxon OID3300020422 Open in IMG/M
Scaffold IDGa0211702_10125155 Open in IMG/M
Source Dataset NameMarine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 (ERX555999-ERR599126)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)743
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_076
CoordinatesLat. (o)-21.0073Long. (o)-35.3344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031250Metagenome183Y
F057434Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0211702_101251551F031250AGGAMDGVYNKENLFAEFEMQKTNKAKVKFLQDMKQLKKDQPNMFRGTKISQKQFDNLIAEWSKDKPWAEINRQIKHAQKHQDDVDNILNND
Ga0211702_101251552F057434N/AYTRSNTEYYKGDTFESNYTLYRNIPYSELSKFLQMQKDPELLKECDTKYFEHQEKNGITDTCFHSEISIVDDEEYFKTYKYVYRSSYNGPSGLIPEEEDYFMDYGQKSNFMLIHDYNPNYTWFGKDWTQEMINAEYEKRALDNSARV
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Institute for Fundamental Biomedical Research
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