NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211549_10071899

Scaffold Ga0211549_10071899


Overview

Basic Information
Taxon OID3300020425 Open in IMG/M
Scaffold IDGa0211549_10071899 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001765 (ERX556083-ERR598964)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1308
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_149
CoordinatesLat. (o)34.155Long. (o)-49.6942Alt. (m)Depth (m)740
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011254Metagenome / Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0211549_100718994F011254N/ATIKHYLNSGCNTKQGYEIWLYGNLAEYFSRISECIAQDDLLQFKNLDNKYLHTVSWNENVKGNFIPNHVKQFFAKGEGPYWYHKDDFVNLPYVAYNGPKVDTNINLDEDLQHTDSKFYGEGQCKSLKQQPVLPTITIEQIKNKKLRETMQRFGFTEILQMQYVELQPNSVIPVHRDDFTYEDGRHIIHGPTQLYFVLSGSSKKIKFKFKNVGLIDTSKPIFINNHKFIHSLVYTGSKPRGVLLAYGIR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.