NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211603_10011872

Scaffold Ga0211603_10011872


Overview

Basic Information
Taxon OID3300020427 Open in IMG/M
Scaffold IDGa0211603_10011872 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3423
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2792Long. (o)26.382Alt. (m)Depth (m)850
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006919Metagenome362Y
F032311Metagenome / Metatranscriptome180Y
F078839Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211603_100118721F032311N/ASPSGEMMIHVFLRKMAPSKGQPKGVMAFNYQLEDK
Ga0211603_100118722F006919GAGMKSFIQHLKEFVQYSTSELVFMNNGQGSGSMGLMIPISGPMFKRIWPDTIRTTVFHVADRNGGLKSLARLEGGKKTISAFFSMTARYMEGGIATSGGIVAEMDADVLVSASDDIMSQVDNKGRRWVEMSWFANAQRYGTGPKFGKVERELNDLIRSLVIKHLGPIMGDTEVRRGHEYVLWGDMKRNLKDSKKLSLVIKDYFDGVERIIKNNSEVMGNIFYGYAKSKRQTENSWDEQIVNNIDITKIHLIDFTTKAPSLKDQLDGNKEFAKSKSWPVKVWDATETMDLEIYTRQVAQAEREMMAR
Ga0211603_100118724F078839AGGAMKEDELISSLVVISFTCLWFIVLFMFGLLVYQTSSHQSQVDDLIRENAKITSLWMEEK
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