NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211521_10019752

Scaffold Ga0211521_10019752


Overview

Basic Information
Taxon OID3300020428 Open in IMG/M
Scaffold IDGa0211521_10019752 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3902
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020603Metagenome223Y
F031512Metagenome / Metatranscriptome182Y
F066804Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0211521_100197521F031512GAGMLNEEMRKLVGTLDKTHKEFVSKVVSSGGINLEASKLGREYKDIQREMIIVDIVEKKEKD
Ga0211521_1001975210F020603GGAMKKIILLFIMSIVLSNCSTYKPLINPETSRDKFNGNNIAGAYWKDLQACNYIFDQNTGKLAVLPDKKGFITKCMNDYGYSILR
Ga0211521_100197523F066804N/AMPISYLEFKLNKEIAYEDTFENDKKIRVQYDEYIKQQQRREEKMLEKDIFFNVYKNDSDNPKAPTHSWKGFTFKEDIVIKAGTKVDMNFWGNSVSKKDGKPNPHLRISNHVPRADKGGVSNRDMNYPTKEQMAQQDNNYLDDDINW
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