NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211622_10019968

Scaffold Ga0211622_10019968


Overview

Basic Information
Taxon OID3300020430 Open in IMG/M
Scaffold IDGa0211622_10019968 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3260
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_123
CoordinatesLat. (o)-8.8951Long. (o)-140.3174Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011949Metagenome / Metatranscriptome285Y
F012991Metagenome / Metatranscriptome275Y

Sequences

Protein IDFamilyRBSSequence
Ga0211622_100199685F012991AGGAGMTYIFPAPGVTGSESTLKIHHTSSTADSTGLLVPALQDVTVNNANDVFTWQQLDTGSKRNIATTATNSISGNIVLDQTSFFGDGNNSATAASQGVFGLSKNKTKVEFNLYFGDTDTGGAGKRVTGVGFITGLAPSVSADAPVWVSPFTITVDGDYTVGDE
Ga0211622_100199687F011949AGGAGMAFIRENGVIISFAEYQDVVDKDQRLFESNEGLTDSSIEKFLIRATERILTKIRSTAWWKDYFLKQSGISINTVADIPAVDPDKILGRTEDFTDLCVFIAMGDFILPSIADFGNEDNAERQKMGYYVNKAEKMFSELITAGDWYDFDGDSTVESTEKEPGRYQLKRIR
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