NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211554_10028715

Scaffold Ga0211554_10028715


Overview

Basic Information
Taxon OID3300020431 Open in IMG/M
Scaffold IDGa0211554_10028715 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3236
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_145
CoordinatesLat. (o)39.2173Long. (o)-72.0327Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046625Metagenome151Y
F069319Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0211554_100287151F046625N/AFIIDNFLSDKELNSFTYNNKEEFESSTGNLTLYYQNLLTSISNKISKHIGEFSLRDAHIHYLKQPYRLHCDSGKTNNSHYTIIVPLDKEPQGGLYIMNQWADKAYSLDDYYTQDWQSVLSLEERKEKIKEFNSDVSLPDTIDFEHIKDKKGFTVKNYIEYEYNTAVMYPSKFFHCSQNIENFTNKKSLAVFTDVR
Ga0211554_100287152F069319GGCGGMLDSYTFKPSELPKIYRVQIKDIIKDIVNDKTDLYWKNYTDEEFNIDEQTAISVSCKEDKVKVISTIYHREFFGEGVYRLWNRFLYSKDFRETGGSKKRDGVHINHPVLEQQIDFVEKLNPKFYFISRQRTNTRWLKYYFDTFNKEYNRNLVVNDNQYWVCGGKKENCVQTIIYPKDMKVPLKQYK
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