NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211708_10000720

Scaffold Ga0211708_10000720


Overview

Basic Information
Taxon OID3300020436 Open in IMG/M
Scaffold IDGa0211708_10000720 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12304
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (96.30%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7788Long. (o)-17.9098Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018089Metagenome237Y
F099884Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0211708_1000072024F099884AGGAGMENLIDKISETRQERLLNPQMSDHYKTMFFGKYGWRIYTIKVGRKWVYMRSNSHRAKLSLDKFKTHAFVQWHCDAKTHASSVAYNETGSYKRPRAWWKNYGFTSNPADILYTKGDLVWK
Ga0211708_1000072027F018089AGGAGMANSKTNDNFVVANPKSTATYGQIQRIAMQFSKAKTCPKDIKFGTIRGHFLAKLNDTKNPLTQGQVSKILSMKSLPKADLTAMRAYKKLVSLG
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Institute for Fundamental Biomedical Research
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