 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020436 Open in IMG/M |
| Scaffold ID | Ga0211708_10003962 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5543 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_072 | |||||||
| Coordinates | Lat. (o) | -8.7788 | Long. (o) | -17.9098 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F080524 | Metagenome | 115 | N |
| F101908 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211708_100039621 | F101908 | N/A | MDIPHWVVGDKHIFNQLEAWEEIVKSKREFRFYFHDHVYDRYDWSIEPKQSWDELVHHRCLQLRQKYRKLSLWYSGGRDSHHVLRSFAQNNIPIDELLLLHWKMNPVRTAEYYNWQLPLAKKYKEINPNVKISTIDVDSKVYAKYYDAKKPESKYFSSDDGLYQPSDFEWHTVNLCNIRDSSTGVIVALEKPYLYLKDGKIYHRFIDKVIELYRGSISEFEMFYYAPEMPELYIKQCHILANYIKQNYPNKNQDFFDQFVENPFGQFYSEFCSACGRGPAIDDNEPCNNGKNKYNGSHGLFDKIIDVAKKDNFKSYQIWQDSVNYWTTNMPEAFGKKNYREGGTTGIRSNEKYITDYIRR |
| Ga0211708_100039623 | F080524 | AGGAG | MNMKQFNEELLSTDWRRNRPQKFGFRMTDQKTIHKHQRLLPPELVKGKTILDIGSYISQTGDWCLNHGATKYTGVEIIKEFADRGIELMEKYHPGENWNIITASLEDYFDQHKEKYDIIFCWGVSFSQIDHAWFIKNLCDRADHIALNWRHPKVMWNDNQHEISDELWKKLEYDIPYQEWQEDKMTQTAGKNASVYCASVHTSLKAVQLLMRMNGFSSNTDSYEFFKKVMPEDIGMFREKNRPGFFVLEGTRDKAAARPNLFNEMYKKPEVWNEKWIDWS |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |