NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211708_10014275

Scaffold Ga0211708_10014275


Overview

Basic Information
Taxon OID3300020436 Open in IMG/M
Scaffold IDGa0211708_10014275 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2988
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7788Long. (o)-17.9098Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016597Metagenome / Metatranscriptome246N
F061259Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0211708_100142751F061259N/AKVDGWLPDWLNPNKGAGYIAGVNFNYAAEKDLVEYYSGDIYIGKRFFILPHLFHIYFKVGPSFARYNYDFVDRSLFTETKIGGFYNIGLQFLVVKGIKVFAETEFRGYGPAPMSDSFNLEKSNVEFVNALPPFSKNYKDTNISKKWARDLITQGIRFGLKFNL
Ga0211708_100142754F016597GGAMDGNHGRFPFASTTGDADYGLFFTPREMELFNDYNTELLGIIAQTGVNYYRVEADSSDPNSIYGESEVKVTRQPVKVNCWVMLDEPDVENNTFTVDTRRRIELYMHKDRLTELDLVPRMGDFVEYDSQYFEVLRASVPNFVFSYPQTKLGVILRCLSVREGVFDPDKDFVNREYLGDAAEPY
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