NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211708_10025287

Scaffold Ga0211708_10025287


Overview

Basic Information
Taxon OID3300020436 Open in IMG/M
Scaffold IDGa0211708_10025287 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2256
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7788Long. (o)-17.9098Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002093Metagenome / Metatranscriptome594Y
F024812Metagenome / Metatranscriptome204Y
F035123Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0211708_100252871F035123N/AMKHLKAKDSYMFDHAKKYDIKKMSIDEIVPASIYEEIPDRDELEKGIADGEMDLPLMLWPMTQDYWKNVHLNFYKRGSPALPEKAPEKDGKVLVVWKGRQRYQLAKELGYTHIDCVIEPELHKIVDKAKE
Ga0211708_100252872F024812AGGAGGMPITKNNFTHVTDTELEGVETAMFTVDFVNAMTAETGDLSTGSSTAGLEATRAVISQFINILAEGPLIESDKQKTYVVRADSLGTLVSGGTLQTAIRALNGAGNVTATISSATVTATKLGIETANAVS
Ga0211708_100252873F002093AGGAGMAYDSTLPAGGPGNFQTPNLAHEGEGCRVDFITVDYINDMSAEVTHSTASANTAGLKLAMEAIQNQGVNILGMGALGNSDTEQTYMVRADALDTISDTTTVAAIQAAIRGINALTPDKVTANISSATASDRDLSDTQVA
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Institute for Fundamental Biomedical Research
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