NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211539_10000235

Scaffold Ga0211539_10000235


Overview

Basic Information
Taxon OID3300020437 Open in IMG/M
Scaffold IDGa0211539_10000235 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20282
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5Long. (o)70.0Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F001724Metagenome / Metatranscriptome645Y
F015078Metagenome257Y
F063770Metagenome129Y
F085580Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0211539_1000023528F001479GGAGGMTREMLFLCDVLEDWCEKNNFPHRCASDLLHNADTKGRLTGNQAYWLESFISTWDIVNQN
Ga0211539_100002353F001724GAGMSIIQKNPMEKEKPKDISEKQKQLEDDKPDYQEKISFLISTVAQSFILAWCLIVLSLGYIKLPNRLFGIDIPDQPRVDSTFAAGLLGNILAGMGVSVNAAQGAKKKKKEDGNGNIGNSSGGVSTIIIKQPLEIVTSKPDVIKVDPNSSKK
Ga0211539_1000023532F063770AGGTGGMTYPNPISSPYVLFKAMEQPKTLKEIKAERRAIIENAWFNQEITDDQLEAEYEALGIVNKSNKLPQ
Ga0211539_1000023535F015078AGGAGMTKTTEQKFKLHANFWFEISTQDLRDLFCTMGQGSGYWAHSVTVGDIEEDEDGYYLPNQDYEHEGCCAWVKDLTLDTKIRIEDIEEDKHELKVAYVIKAIENIVSGKTNLNTYDCSKVFEAFKDNDLGLIDASIADSILQITTYNTLVYG
Ga0211539_1000023537F085580AGAAGMIIKSNSTFSLVQTITDQIFLIVNGTYSQSVLRVWHISQKQDALYEWNRITS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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