NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211539_10047577

Scaffold Ga0211539_10047577


Overview

Basic Information
Taxon OID3300020437 Open in IMG/M
Scaffold IDGa0211539_10047577 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1687
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5Long. (o)70.0Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007537Metagenome / Metatranscriptome349Y
F017556Metagenome / Metatranscriptome240Y
F044433Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0211539_100475771F007537N/AMKRLLYLMVIGVIFTSCQKEEFELEANYQFEMTGRSFQDVNGYYHVKINPLENQQSLHRFGAYVTNTDKFNLPTQVLWRCDAFWYTPDTLGHTYIEIGNVPTGESPWSWENFAVTGYQGMTVPIVNGTSHADPAVDSVFCMMAPI
Ga0211539_100475773F017556N/AMVKSKFKIGQVVSFSTAGAIGSKARSGGVITAIKKMYELKDENKSYYPDGTCMGELTTFKHLSKGKFKGYAYRCKTIQPKGYLPEIVTVEEFKLKERSC
Ga0211539_100475774F044433N/AMENLNNQGKRPDQYTNSSKFAGYGIMGMIILLILITLLGGCATTHDTSKECCKSEKTSTK
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