NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211539_10110644

Scaffold Ga0211539_10110644


Overview

Basic Information
Taxon OID3300020437 Open in IMG/M
Scaffold IDGa0211539_10110644 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1108
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5Long. (o)70.0Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012584Metagenome279Y
F016820Metagenome244Y
F099447Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0211539_101106441F016820N/AMTKKEFSYIVFSSSGDNVQEIQGVYKDLEGAAYGAKAALSTLFPNHGDKAEIIRCEIISTEEAKIEYEKTKPKDIFEKCEDGFCPMPTPQTQEV
Ga0211539_101106442F012584N/AMKLKPKSPPLPENVFTLNEDSLPTLSDADPWMKIMVWRKDVGWSIIHHSEAIQFVAMKHTHWTFTPDFPYNKSVTEQ
Ga0211539_101106443F099447N/AVTHHNNGLANLIIGCKMNMSLLKKNLMSYVQTEGDKSDEKLLRRLLSEKMPKKDADKIISHCFSDLIKWTYDDAVFQLTEIFSFTDQECEQLLKEYDILSATTEEVIMNPAPNFNATAPRDVKDLAENLWQARKHISDAKKLISATALTPDDYDNQKDFQEAVVQRANVNFHFISITKYIDEMSEYTKGYVPPLRKLK
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