NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211539_10251829

Scaffold Ga0211539_10251829


Overview

Basic Information
Taxon OID3300020437 Open in IMG/M
Scaffold IDGa0211539_10251829 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)729
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5Long. (o)70.0Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016980Metagenome243Y
F019152Metagenome231N

Sequences

Protein IDFamilyRBSSequence
Ga0211539_102518291F016980AGGMKYKELLNELQHLSKEQLEHEILVFRRDKEKFISVQSGLFYVTEFDEYEQVLETDQPYFS
Ga0211539_102518292F019152N/ANLSEEEINTVIEALSRDYVENDPEILEKEYQLQGKLREIISTFYTKIDAQKFTQMQVESIKGSTL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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