NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211539_10285545

Scaffold Ga0211539_10285545


Overview

Basic Information
Taxon OID3300020437 Open in IMG/M
Scaffold IDGa0211539_10285545 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)683
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5Long. (o)70.0Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004144Metagenome / Metatranscriptome451Y
F007002Metagenome360N

Sequences

Protein IDFamilyRBSSequence
Ga0211539_102855451F007002N/AMNDTYLTILNSYGDIVELDYQFDVQSIIEELKSIDNWIDGSNNKKGLTLTGSVNDLELTKRNDSSINDNLKKCPSLIEFFKLWNSLAKCHAVNMNSGSFFRLHRDAYKTNQQMRIFIPLNKTELHEFAFIYDKNIVELKAGRAYLLNTKKQD
Ga0211539_102855452F004144N/AKYHLEVETGWTYWFHLKHSLVNSYKLIKISFKSLVHGLLPFMWKADAPKDVILLYHEIMKIQHIQKLDKLRRYPKNERYLSNDTE
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Institute for Fundamental Biomedical Research
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