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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020438 Open in IMG/M |
| Scaffold ID | Ga0211576_10000236 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 48763 |
| Total Scaffold Genes | 91 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 63 (69.23%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_133 | |||||||
| Coordinates | Lat. (o) | 35.4118 | Long. (o) | -127.7122 | Alt. (m) | Depth (m) | 45 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016155 | Metagenome / Metatranscriptome | 249 | Y |
| F025261 | Metagenome | 202 | Y |
| F027243 | Metagenome / Metatranscriptome | 195 | Y |
| F037812 | Metagenome / Metatranscriptome | 167 | Y |
| F074737 | Metagenome / Metatranscriptome | 119 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211576_1000023619 | F016155 | N/A | MILECEYCYSRIVIKPDDRETRINFCPHCGEPADDDLDELDFNE |
| Ga0211576_1000023621 | F074737 | N/A | MAKILQFPTKEIIKEKDEADNLNKLSDECVDSSHFLLEVLEEFINTGEVHKDFIDMDFRDETKQESRDMFVIVNMMNAMFTRWYGIPHGLHQTMDNAYIKVKEMIVLNEEANHELAEYIFEPEDSDMDIEFTFTPEDPENNDTD |
| Ga0211576_1000023641 | F037812 | N/A | MKHMIKWLKISAAINVYLSIILTFVLVALMIDIGLDSYWHSNDFMEQFLLQKNDSK |
| Ga0211576_1000023668 | F027243 | AGGA | MKKTKRQSVSTLTHTTREVAIHFLAWREALKNKSMIGHNGGPK |
| Ga0211576_1000023688 | F025261 | N/A | MAVPSITLPSLECPDVLLPTPANLSNLFGGLATQAYRYPDELKDLKEKLEQIEEDILDIYNPKWEKIDIPEKKWDIMMTRLAAEYPMYVQKKILELIDTLFPIDFNVTVLGIQIEIISFLRDPSSISDSIFLKDIDDLYLKIPEEYRVWNKFETADFKKASVMNYIRSEVAKKMNLLLHGGFTGLIGTFDEVWSALGLPTIPALEELDLETLIRDKTTEELESISIFGYSLNDLLGGDFDNNVDIDEYNKERLLKRAREFAEEWQTYLIKKWMEKVTAFFDAIGLSSLTEFITFTFCDFLKIVGFPSTLDLPPSIQTAVATTNSLTVPESSG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |