NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10001508

Scaffold Ga0211576_10001508


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10001508 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17677
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045852Metagenome152Y
F064877Metagenome / Metatranscriptome128Y
F092351Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000150812F045852N/AMLYILGLIILLCIFSYTLKEGYLNYQELSYKGSKNNCPQIHADNYQKILMNTQTIQPFGYTKNDLFHMTRFLKTDVPLPTDPDLFNHI
Ga0211576_1000150813F092351N/AMKLEDFIDFHILFMTICILIAYEYIMGGTNIIIEKKIKDK
Ga0211576_1000150824F064877N/AMTSMEEQSRCFYLDSDYQPASDMLRKCVGDKTSPYRFNCGDNPLRQELPEDVKETARMNDISIQRGFSFYNVDNHNVNTFSDKKPVKSNDFLGNFGYEGFQNQGIFITDNGLGESSVPKGECPEGYSRDLSSGKCIQKCIGCVYRDNMKSREFNEADPCFPNGVYDGTTNEGFIKCTCGRDNKYCSDNFIKNMFTTDGMMISGQKIIMNTGLTKTIDELFNFDYL
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