NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10001522

Scaffold Ga0211576_10001522


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10001522 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17585
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044515Metagenome / Metatranscriptome154Y
F047691Metagenome / Metatranscriptome149Y
F047972Metagenome / Metatranscriptome149Y
F066270Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000152212F044515AGGAMNKILYNTIMMSTIFFIIFGFLLSVYGLHLDKDNYVYVGISIMAFVCSVWWFWVMFVIKDMFTSIEKAADKMIGVREELGTIRGLIARLFERKDDK
Ga0211576_1000152217F047972N/AMRFTEFAPDMMIDRYVITLKNLIGRAAAKKVPSKMNWIALNKILKSNDASLVADYETFKSVYDQSPAIQGLVKNFDARGIDLNVPGAPDADEAPQDGTDSQAAVDKTAAAAAPQQLAQQT
Ga0211576_1000152227F047691N/AMKCEQGDLAKIIYSVNPNNIGKVVLVETYIGKFQRGDKFDFRGVACMLPVTDHYWWIKGDGLANQLGDTPKAYIADSWLEPLRPNADREQASKKSKLPKQVAA
Ga0211576_100015228F066270N/AMRIDEVVDIRYSAFDKPGKMHTIGDVYDKKKNLKVPHAKYVDTTNRQKKLLKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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