NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10003180

Scaffold Ga0211576_10003180


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10003180 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11553
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023217Metagenome / Metatranscriptome211Y
F047318Metagenome150Y
F071306Metagenome122Y
F084709Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000318015F084709GGAMTKTKYNVGGVIVETDGSYENKFRVLRMAMDNWSKKNAGISIDSPKGRQYSTDWDRYLKLNELFKFHKPDFIKKKHMIEVNGLYRRYNG
Ga0211576_100031802F023217GGAMKKWKTPKAIASQKKIDKGLAAFGKSIGLDKPFFAAQTFDDTSGTWKICPCCGGDSIIADFI
Ga0211576_100031805F047318GGAMKKTKTKNTPVKYTEKALAYFQEMNDQDEFMTEPVNGDYVDYLLGDMGNNSYQGTQMDTEFEDLGDDSDWFMD
Ga0211576_100031809F071306AGGAMTYREYKPTWLEQKIFVDTYGRDYNLSDVPMTYMTREQAYDKRGLSDEEIDVIYEKWISEQEENE
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