Scaffold Ga0211576

Basic Information
Taxon OID	3300020438 Open in IMG/M
Scaffold ID	Ga0211576_10009547 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020438 Open in IMG/M

Scaffold ID

Ga0211576_10009547 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6194
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6194

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4118	Long. (^o)	-127.7122	Alt. (m)	Depth (m)	45
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4118

Long. (^o)

-127.7122

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017147	Metagenome / Metatranscriptome	242	N
F018943	Metagenome / Metatranscriptome	232	Y
F020191	Metagenome / Metatranscriptome	225	N
F074760	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100095473	F020191	N/A	MSNLENIKSLYQSSAYRDILHDVNGVVFPFNPEWKNIGISLSGGADSALMSVLLCSIISQLKSKTNVHIITNIRCWKTRPWQRHISLIVFNWIINSFPNIQFKRHENFIAPDLEWGSKGPNIQDEYGKLKSGNQIELRAHAEYVAHTENLDAWYCGVTKNPDKEFDGRLLARDIEDATLDRLIKTHMGGLACHPFTYVQKDWIVAQFKKLGIMDLFDLTRSCEGDNQTYPEVFGDLDYKTYVSGSPVPVCGKCFWCKEREWGVSECQD
Ga0211576_100095474	F074760	N/A	MLKKLDTKTDSKILFDLVKHLPEGKNTLNKPTGDFFYDPWEVLPEYKGTAIEDLLKQLPDHGEARVIVMAPGKSYSVHADVDDRYHVTLDAEQSFLHDIENETMYPSKPDNTVYLMNAGMLHSASNYGYKNRYQLVIRKRLQSNRMMNDPRQVVMTSKDPVYNLRYLFDSSFSILLNRLAKEQSIDAFTRINEHTIKFLCDGSKINELLKMQQICGFKIDIVYA
Ga0211576_100095475	F017147	N/A	MPNWNNFYKYKKGLAVANMLYQPLVSEDNNVFCMNWNPNDYFNNESMNEELYNFWFDQEVVYLSKLKGEKYIPELLDIDYDKREIKFKWYNKSLNVLIETNQIDSIPNWKEKIKQIKQDLEQQNIYKINMYPHTFYFDDNNEAHCMDLYGCTDNDNRYLDIKYLKPLIRTDRFDKFILNNQLDTHELYKETIKTNYAEWPGDFLNA
Ga0211576_100095479	F018943	GAGG	MRIAITGHTSPMGKDVYEHYSKTHECLGISRATGYDLTNTDSINDTVSEVLARDVFLNMAHVGASQSVLLMKLQQRWTHDAPLRKVITIGSLATKVPKKLLDQVGIDKQYLKDKHHIDDVHNALANQTPFGKQLKFSLVRVLNYG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211576_10009547

Overview

Ecosystem & Geography

Associated Families

Sequences