Scaffold Ga0211576_10011956

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211576_10011956

Scaffold Ga0211576_10011956

Overview

Basic Information
Taxon OID	3300020438 Open in IMG/M
Scaffold ID	Ga0211576_10011956 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5462
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4118	Long. (^o)	-127.7122	Alt. (m)		Depth (m)	45
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029566	Metagenome	188	N
F052884	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100119565	F052884	AGG	MNNILCLGASGYLGSYLTDRFKCITTAKRFQWSANVWRYDLAHQYDFVFLLARTCRKQYPRRDRLTMMDEVGGVVKVLTAHPSSHIVFTSTKCVYGIANEEERPMTREDIGDYFERVLNGEFINKTIDLPQRDDGMHVSLINALSDHHRVYADTKICDELLIKNCAHRHTIMRIWDII
Ga0211576_100119569	F029566	N/A	GDIDMAHSVEQLYEKVAVLHTKAIELHRERYKTQGSYDKAKCTFLLADVRTLAREIERGLVDLDIEFSKSSIDS

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