NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10027800

Scaffold Ga0211576_10027800


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10027800 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3366
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007343Metagenome353Y
F019151Metagenome231Y
F024570Metagenome205Y
F031530Metagenome182Y
F033836Metagenome176Y
F066845Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1002780011F033836GGAMTISEYEFFGVDSSYANAKNTRDTISAGIPATREPEEETNTKERFTIMVKETEIKSVALCTLALLAGLCCALMLGCSTSAKVEGGAEIIELKPLKMQELTYPVHDYSKICADCGFGEWTDSWCEAHMGEAAFCSASK
Ga0211576_1002780013F031530GGAGMDFVVYKSEADNQGRLVELVHNKHCEVYEVIVDGIPVFNCTDYEQAEHEFKMECV
Ga0211576_1002780014F007343AGGAGMKVSDLQPARFPASPSVELPNSDAHRLFTNDFNKNSFIEANGDVEIVWNNQYKYWTVPAFAESRAAYGEAKQRFCDQHGSE
Ga0211576_100278005F019151AGGAMIIANARARDGLELFDNDGVQAFEMKNETLKMCADEDGSLWNSVRSLTLRDAEGNALFSLSWSETGVCGSLHDDELTVEIEEEF
Ga0211576_100278008F024570AGGMAYVAYEIRQTKETATGTRHLVRCNRLGKYAICSWVGSTGSAMGTVECQGDYKYVMKKWKKIQRKRQPVT
Ga0211576_100278009F066845AGGAGMMNNRKKAIAMHNASKKRFADIFTGCLAHGTLKQTQKKIKTFKLKKG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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