NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10075277

Scaffold Ga0211576_10075277


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10075277 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1891
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003154Metagenome / Metatranscriptome504Y
F038903Metagenome / Metatranscriptome165Y
F086185Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0211576_100752771F086185GAGGMMEPDMITLDDLLEILSTDLTPTEIEAFLYEWGVA
Ga0211576_100752773F003154GGAMVEQRTKRLFKRLRGVTILMDTLSYAMNIFGGVYEDDRGYRHYRAQGRTYDIKFHPMTLEWSCNCPAYKFGRGKACKHIKEIQNN
Ga0211576_100752775F038903AGGAMTDEEKGIWNGGNTYTKRELEILRGQEDHYDAMDSEQETREDLKERQKIMDKTRIETKPMHELYKGINKQINNFEKWKDERTPWSNMAGPKRDKS
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