NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211558_10000287

Scaffold Ga0211558_10000287


Overview

Basic Information
Taxon OID3300020439 Open in IMG/M
Scaffold IDGa0211558_10000287 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26943
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (40.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_141
CoordinatesLat. (o)9.846Long. (o)80.0607Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018269Metagenome236N
F057684Metagenome / Metatranscriptome136Y
F085688Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0211558_1000028711F057684GGAGMASFRKRKQMQPFDYLNTSVKSYGRVSKVHGIGLFALIDIKKDEQVFPEWKGETGWYKIKWVEAQKLPKEVLAYVLRSYGSDIKSDDSFIDFKLVKDTNFLFSNPLCLLNTQYENGNVDSTTGIALKDINKDEEIFGNYGNSSQIKLL
Ga0211558_1000028734F018269N/AMKIGINLVGVSYNNAIEGGRLRDYENSINNFYKNVVNPLRKDGHEVKFYLFSYSNEKQNKIVEDYSPAIKHTFVEPDYNKLGGGDRMGNGMKIMTVSYLNSLQQLYNEDLDLVISTRYDINFFRNPFEEYNYDFTKCSFLWREPEFMDLPIVNDTFIVFPYKMLESFFDAVVEMETNPPHGVNSGMHNLYLPMVNQVGEDNVVWLDDEFKSAVDNSLYKLERTE
Ga0211558_1000028737F085688AGTAGMIILGCITKYKPEDIKPYVESIEQSGFKGRKVMMVYDIPQETIDYLKSKEWELYQNELQQHIILQRFRDIYKLLEQFPNETIIWTDVKDVIFQKDPTEWIEKNMKCSIMAFSESITMKDDPWACVNSGTSFPMEWEWLQNKTSYCAGTIVGDSEYLRDLFINIYRWSMTTSNPDQLSDQAAYNVLINQYSWIDCVQKVNQEEGFVTQLGTVLVKKDEFKDVLLEPTPIVDENYIVKNQKGEVFPLVHQYDR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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