Scaffold Ga0211558_10001389

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211558_10001389

Scaffold Ga0211558_10001389

Overview

Basic Information
Taxon OID	3300020439 Open in IMG/M
Scaffold ID	Ga0211558_10001389 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13197
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (47.37%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_141
Coordinates	Lat. (^o)	9.846	Long. (^o)	80.0607	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042346	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_1000138919	F042346	N/A	SPFWGAAIATIILLTTGDYKWWLFGLFCLFAFLGKLYIKNVDSNNEDIWKQR

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