NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211558_10033019

Scaffold Ga0211558_10033019


Overview

Basic Information
Taxon OID3300020439 Open in IMG/M
Scaffold IDGa0211558_10033019 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2623
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_141
CoordinatesLat. (o)9.846Long. (o)80.0607Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006008Metagenome / Metatranscriptome384Y
F017146Metagenome / Metatranscriptome242Y
F043982Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0211558_100330191F006008AGGAGMPLVKKKLSIAAGATSDQVLAGTTYEYVDPGTRIV
Ga0211558_100330193F043982GAGMHQFLLYSVIFVSLTSFFLALIACARVGNFIKSTDGLDWSSVANITGDLATLKKTIQTLNNRMNGMHSPKVAEQELLMQLMTKQQNQQVNGKLNGG
Ga0211558_100330196F017146N/ANLSLTADFLGISEDALVALLLKRFRNDGPVVTKAALRKTKSTIRKLKNMCDMYDDLRPAARRRTPMRRARSASTTLIKN
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