NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211558_10395008

Scaffold Ga0211558_10395008


Overview

Basic Information
Taxon OID3300020439 Open in IMG/M
Scaffold IDGa0211558_10395008 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)640
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_141
CoordinatesLat. (o)9.846Long. (o)80.0607Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016269Metagenome / Metatranscriptome248Y
F025275Metagenome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0211558_103950081F016269N/AMTANDFIFICEEYNIDPVIASEDEGVRKILKTPTSDVNQQLMLSGYLHKHF
Ga0211558_103950082F025275N/ANDLDKALEAKVKLRTILMDDDNAESCTTSTDGMQSVINYDIEECEHEIVKIIELKPTWPENKDVREYLVWDQMNCEAPYDGDYLPTDMAVIKDLCERQEAVADTFDVEVFHEFVNDLWYGGAAMFDADDLCIYYFKMPKVHLPSQPVEFKS

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