NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211559_10000005

Scaffold Ga0211559_10000005


Overview

Basic Information
Taxon OID3300020442 Open in IMG/M
Scaffold IDGa0211559_10000005 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)125909
Total Scaffold Genes174 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (31.61%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_140
CoordinatesLat. (o)7.416Long. (o)79.3102Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005287Metagenome / Metatranscriptome406Y
F007770Metagenome345Y
F016956Metagenome / Metatranscriptome243Y
F039679Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0211559_1000000521F039679AGGAGMSAKNSHLTIRDDLVEEGLSVPVWFLDYKEDVHVEDTATLNIDCDYCTDGEELNDWGANIIVKITDPTQKDQYGNPWKDRLAFAISADFDWN
Ga0211559_1000000523F007770N/AMSGEGLSVSFRRTSMTEKSNAELLREFQKIIYASPVMKHMKWYGKAHTLDILEHGDDNRQKWEQEYVAIKDTFQFEISVHESWYEDADLYESHEREDSFVSLAMKFADDNYLMYFSQGFPAEWIETETIDGEKCWNHFKVKPNDKNIDKICKVWHHYGMRMVQAERRHQTDDMKSSYWANASDEIKKLMEKKEYAK
Ga0211559_1000000526F016956AGGAMKLEVEERWRVPASARLAIIDLALTHIKKVELNAEVKTDGDNFDYWNSYKLEDGTYIDYNIYCGDEVGEFTEDGEYKYGDPSEWSWDVCAYAVDPPNEESKYHQIDTSRDHYLFSYNKSYGNFEVEFEDE
Ga0211559_1000000547F005287AGAAGMIISKIKSSQIIYSEHDIDECFEYKNGRGRVPDGVAIGYEDEDHDLAGPITTLVLFEDIKYSEYDHDYWNNYELENDTNRLILP
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