Scaffold Ga0211559

Basic Information
Taxon OID	3300020442 Open in IMG/M
Scaffold ID	Ga0211559_10008883 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020442 Open in IMG/M

Scaffold ID

Ga0211559_10008883 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5269
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

5269

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (18.75%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_140
Coordinates	Lat. (^o)	7.416	Long. (^o)	79.3102	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_140

Coordinates

Lat. (^o)

7.416

Long. (^o)

79.3102

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025731	Metagenome / Metatranscriptome	200	Y
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y
F048249	Metagenome	148	N
F055727	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_1000888310	F018534	N/A	MALPTLTDFLTSWDKLIVTGMTPERNDSVMTVAPNGATVTIEYRHQISHSSGVCSTIAYLVGYDSNGNRVTLRNQTYGCFGDEEKQFHQWFAKKFATAVEMDARRSRDLSDGIDRILA
Ga0211559_1000888312	F020115	N/A	MANVNIDTQMMNNTMTYEQFQLLRQWAERVANTANDTDTNIRSIDLVHDIAGILANDEHFLPRL
Ga0211559_1000888313	F009699	N/A	MITEDLNLQDMMTDKEAQAFMQKVDSSAPFWQELHSEDRPTIKIQGRDVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAMHSEFMGRFNEQNDEETTD
Ga0211559_1000888314	F032639	GAG	MKKQLINEDGFYAGSELKWGMDDVRNVLERFGRATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTIAYMIDEGQLKTDEQ
Ga0211559_1000888315	F029600	N/A	MKYWNGEGQYQDLFHKHWKNLVPESGRADTAEGNAMRAIAKINYDIFNNGAGNIVNQVEEMDEDGEYYTDYSINPWWNEYFDDIEEFAGLNMDRLRTKILGYVHWDRDAGLSELMDDYIDRIVLRVDNQSVTK
Ga0211559_100088834	F025731	N/A	MLHSTNTERKKAQMASALFNDVQLLGSTVTCTAEFDLLSCDEQMRLVDLVNSAQ
Ga0211559_100088835	F055727	N/A	MYNHFLEFSVDEMVDAYTYFTLIHDYEGCRLVGAAFAQNTSIDFQNF
Ga0211559_100088839	F048249	N/A	MKTSIFNTRIIRKGSQVLYRGSWGRDAQTVAEVIAIEQTQGPNEKYGDEVDAVTLDDHYVLTLNNGHWCYSYQVDGLVQPNENQSVAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211559_10008883

Overview

Ecosystem & Geography

Associated Families

Sequences