NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211559_10114854

Scaffold Ga0211559_10114854


Overview

Basic Information
Taxon OID3300020442 Open in IMG/M
Scaffold IDGa0211559_10114854 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1292
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_140
CoordinatesLat. (o)7.416Long. (o)79.3102Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F059061Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211559_101148542F000613AGGAGMPLVKKRLSVAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTAGSATADTTMDFTVNNAEFSKNASVSGLVDGEPFGWNGNYVMNDMVTTGQVRNRPIITFTNGTGGTRTIDVAVFIGG
Ga0211559_101148543F059061N/APALTTVTNIGAQESQGSGSIQAGAGSLLAPLVGGLRSALKTPQGQLALGGGAGLVTSLLGGNGKQMRITRKMKSQARMVLNMTNGNISAAADILGIDQNTLIMILLKRFRNDGPVVTKAALRKTKQTVRRLKSMCDMYDSLRPTAARRRSPMKRATTTTLIKN
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