NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211564_10024349

Scaffold Ga0211564_10024349


Overview

Basic Information
Taxon OID3300020445 Open in IMG/M
Scaffold IDGa0211564_10024349 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3025
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3354Long. (o)-103.0345Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053539Metagenome141Y
F054094Metagenome140Y
F103059Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211564_100243491F054094N/AMDNNDYTRRNRFSGESIELTKEEAKKHDELFYHEALATLEDKQLGEGMSKHWQE
Ga0211564_100243493F053539AGGAGGMKQFPFKDGTLFMITYCPQTIGGEVNYEHKHITRRGKWDNGCRINKGFILYYDRDRGNYRYASNKLAPVCISLGLNKEEMRVIN
Ga0211564_100243496F103059AGGAGMQENIRHSLMKQKIYYSVDEETGDITLDLHEMEQEAIEQLKEANPGKKVTAAYAS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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