Scaffold Ga0211564_10055052

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211564_10055052

Scaffold Ga0211564_10055052

Overview

Basic Information
Taxon OID	3300020445 Open in IMG/M
Scaffold ID	Ga0211564_10055052 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1986
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_138
Coordinates	Lat. (^o)	6.3354	Long. (^o)	-103.0345	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009558	Metagenome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211564_100550523	F009558	AGG	MYHDYYRHKTWEARHYWVNQFGIIEHDIFAHIPPQHYVVKWKEGFERKEKHFDNKKKAQAFFRTVRKTATHFYRIVKWY

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