NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211642_10096674

Scaffold Ga0211642_10096674


Overview

Basic Information
Taxon OID3300020449 Open in IMG/M
Scaffold IDGa0211642_10096674 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1279
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_110
CoordinatesLat. (o)-1.8191Long. (o)-84.6284Alt. (m)Depth (m)380
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F004439Metagenome438Y

Sequences

Protein IDFamilyRBSSequence
Ga0211642_100966742F004439GAGMKSLIQHLNERVFKSSLSDMLFQPKITEYNRLMIPISSSMYKRIWPDNIRATVFHTTDNEGVKKIAKLEGKKTQISAFFSMQSRYMEVGIATSGGVHAVLEMDADVLLSAKGDVMSYVDKGGRRWITIADLEETSRFTNFSKVLVDLEKMFAALVPKYLTRGEFQDYSTIFQIWHMAKRKVDSKTMSLIIKDYMDGMEKVIKKNIDTFSSAMRSYAKKRSSDYSWDEQIVNNIDVKKMHLFKLPDPDDTMPYPEENDEQDELIAYAASKGWPTKIWDAAIELEIYTRDVANKELEK
Ga0211642_100966743F000245N/ADDKMDKAVSDEIKKRKLARFPINATDDYKMKNKKNLAFKFPTPSGELMFHVYLRKMAPSKGQPKGVMAFNYDIEDK
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