NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211641_10003912

Scaffold Ga0211641_10003912


Overview

Basic Information
Taxon OID3300020450 Open in IMG/M
Scaffold IDGa0211641_10003912 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9405
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9554Long. (o)-100.6925Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F000681Metagenome / Metatranscriptome939Y
F005266Metagenome / Metatranscriptome406Y
F028616Metagenome / Metatranscriptome191Y
F072253Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0211641_1000391211F000681AGGAGMYKRDDHYYAKIDSGYLYKELDTHYNAETDLVSNLMSYAISDGLVETRHELGVANEELWCLNDWPEDQGFQGSDRSEYLRRIKETIAFERKFLQAENELVQINKLTECPKNDTVRKYMTMNDKIAEGMVA
Ga0211641_1000391221F000379AGGAGMQKIDYTNKHGIMIGYIDRSDNVVAVETGWKTTPEAMTQVLMGQYNSKEMAQELVDSPTLMPTFKKDDYWYVDGFGDVIESNLSWNKEEMRKNVGHLFLFMKGTWQYSDNGIDWEPAVECFKEIA
Ga0211641_1000391222F028616AGGAGMPIMSKQAYLNLMSCVVRKSYTVHHKYHSPAHIKFKSYSQAKAYCIKHQLNWKSSWVLTTVHHCA
Ga0211641_100039125F072253AGGAGGMPKKNNEWLMGMPKGPIGPFLWQVYVKGSQKPIRVIAFDLRHIKNQLEGKKVTKAIKEKEKKEVFGNSVPLGPKGWKGSSRPADYDAGFKVLRQWVDENGGPPEEIRQKLRELWIDYDRAPKKTTRSSAKKKGRY
Ga0211641_100039126F005266AGGGGGMSVHIRYRFLKEKGDYLEDEKMTRGYTLVETHIEHPFHEVLKEFYKDFKGRAVQIFNIWRTPAGEANYRMEEEERRMSE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.