NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211545_10000136

Scaffold Ga0211545_10000136


Overview

Basic Information
Taxon OID3300020452 Open in IMG/M
Scaffold IDGa0211545_10000136 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45213
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (24.66%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_152
CoordinatesLat. (o)43.6906Long. (o)-16.8555Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002033Metagenome / Metatranscriptome601Y
F009608Metagenome / Metatranscriptome315Y
F013325Metagenome / Metatranscriptome272Y
F024830Metagenome / Metatranscriptome204Y
F038691Metagenome / Metatranscriptome165Y
F059026Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0211545_1000013619F009608N/AMKYIKPLNEGRPMFQDTPNEFAYLDFNAWAYKNRGKIKKELKGIKDGTQFFIKLRDLWQQWANKEAKEWSYLHSTDLAKKDFGRALAVLLKGDDLIIKRSTNKLTDLK
Ga0211545_1000013641F059026N/AMEHIKDYKLFKESLQIDLITERFSSSILRDFASQDGLKSRWSGNLAKDMQKFANLAIDKISDSDFTTTTPAAYWKGPDAKDPNKVGFFVDDDKNFIKWAKANKKYLPGALDLKNISKYGVVLSVVRGGVGMWSGFAMDRGSTYSRHRKGADDRYGVLAKDYETRSLYNGWDGAPAPKVTRKNLIDAATRVYVLDLNSLRDKYDVSGLKSDRANSKMGATALKTAKEIKDENRKRYTAILQDKAAMTDIDKAVRDSIEMLNQHISDALDKGEMDQYGNFVIGKSPRGGSVSIKDGANAIRNMLDDYQRYKDYERQDKDAKADGREDNYYAREVKAYAKRLTDYAKKVKAKNYAW
Ga0211545_1000013642F038691AGTAGMGFHKRHIDNEQVLRLYEDGGINRIREWYTKGVDALITETGLASRVGHVISDDEWTQMGTVRQDEEIFKLIRQEYGTPVVKK
Ga0211545_1000013643F013325N/AMAKTIKMENAVHPHDTKEGQQELANELPPRKMSEIIADKRAALKKNEDLLRDLQTNEYDIPVGSAKLYKQIMKFLEKEADWGHTTATGLIMLYSNMKEQQPVTREKDWDGNIKLRGTSITIFWSMITSMKGKGFFAARDFVEMMAAFGSDLSKVVGKVHEDNQALRENHAEMAKLDQEVNHPDVILDVAIDEYQKMEEELHELMDEVDPVVENV
Ga0211545_1000013670F024830AGAAGVANTPIIPGVPTPISGDPKCALTLCGKIIAQVDCIIVIMQGTDGCIDLQFFGKDGKPLDLTRYTSLQIMLYNEFDCTVANFWWPDVPTGCKGFLMTILQYTDSKGVVHNKGKVRICLDPACTKTSPSAIFAEILLTEAMTGGTAETSGIPCLQVAKIIASRIYENGCDDGCS
Ga0211545_1000013671F002033N/AMSKFNKFFADHGIKIVLVLVLLSYFKSCGIDSEVERIKKEQRILTNEIDTLSSQIVNEEEMIFLIKTVPAWKTLRIEEISDKERISINALEEKED
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