NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211548_10360912

Scaffold Ga0211548_10360912


Overview

Basic Information
Taxon OID3300020454 Open in IMG/M
Scaffold IDGa0211548_10360912 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_150
CoordinatesLat. (o)35.8591Long. (o)-37.1728Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F000896Metagenome / Metatranscriptome845Y

Sequences

Protein IDFamilyRBSSequence
Ga0211548_103609121F000896AGGAMEPQVSKVLKIQRLRNRGETIMTNKINMVINLSILALLIYLSVAVKQLQDKVFPDPNIMIPLIGNMDSKSELEYNIRTFLNNALSKAIEEQENQ
Ga0211548_103609123F000302GGAGGMVATMSADTKLRIADLERQKIELENQLEHLGYSGNLVRMHEIEQEIYEIEDTIRKLLP

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