NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211514_10084436

Scaffold Ga0211514_10084436


Overview

Basic Information
Taxon OID3300020459 Open in IMG/M
Scaffold IDGa0211514_10084436 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1590
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_004
CoordinatesLat. (o)35.5571Long. (o)-6.5586Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004819Metagenome / Metatranscriptome422Y
F054087Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0211514_100844363F054087AGGAGMPKFKLLVDVDAMVEEGEHLEDLFLNGIEADTEEEAQRLVQAKIKELMYGGPYYTVVDWE
Ga0211514_100844364F004819GGAGGMEYLPREDDNRLDERTARFHARVMKEDLATLPYVPNTANRDINIARASNYVTWDYDKDMWCSVDHLMMNFYIKATTDQSREVLEDMINRDVVRLIKGPRYYQQAKVYCMIDMHYPEDESIYDLVKKPKKDRNAHSISGDEGEITYHVTLHIQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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